ACES: AlphaFold Protein Structure Prediction

Event Type

Webinar

Sponsor

ACCESS, Texas A&M University

Date

Oct 7, 2025   10:00 am - 12:30 pm  

Speaker

Michael Dickens

Registration

Registration

E-Mail

events@hprc.tamu.edu

Views

2

Originating Calendar

ACCESS Training Events

In this class, participants will:                                                     

• Learn about AlphaFold resources and Limitations
• Learn about shared database files
• Learn how to run ParaFold to reduce GPU idle time
• Submit an example ParaFold/AlphaFold2 job script
• Submit an example AlphaFold3 job script
• Visualize the AlphaFold job results

This course focuses, among others, on the following topics:

• AlphaFold History
• Running AlphaFold2 on ACES                         
  • ParaFold AlphaFold2 workflow
  • AlphaFold2 with reduced_dbs
  • AlphaFold2 confidence metrics
• Running AlphaFold3 on ACES                              
• HPRC Cluster Utilities                              
• Visualization of Results                                 
  • view predictions in Jmol
• Job Resource Monitoring

Note: During the class sessions many aspects of the material will be illustrated live via a login to ACES. Attendees will follow along and complete the exercises on their own computer.

You are encouraged to contact the HPRC helpdesk with any questions regarding ACES.