In this class, participants will:
- Learn about AlphaFold resources and Limitations
- Learn about shared database files
- Learn how to run ParaFold to reduce GPU idle time
- Submit an example ParaFold/AlphaFold2 job script
- Submit an example AlphaFold3 job script
- Visualize the AlphaFold job results
This course focuses, among others, on the following topics:
- AlphaFold History
- Running AlphaFold2 on ACES
- ParaFold AlphaFold2 workflow
- AlphaFold2 with reduced_dbs
- AlphaFold2 confidence metrics
- Running AlphaFold3 on ACES
- HPRC Cluster Utilities
- Visualization of Results
- Job Resource Monitoring
Note: During the class sessions many aspects of the material will be illustrated live via a login to ACES. Attendees will follow along and complete the exercises on their own computer.
You are encouraged to contact the HPRC helpdesk with any questions regarding ACES.